applications to Bioinformatics
The course will consist of 8 meetings, 3 hours each, on
Tuesdays and Thursdays during the vacation between
The first meeting is dated Tuesday 25.1.2005, and the
last one is dated Thursday 17.2.2005.
All meeting are between 12:30 to 15:30.
In the PC classroom on the third floor of the Dean's
Who will teach?
Dr. Yoav Smith.
What will be taught?
Introduction to Perl, Scalar Data, Built in Functions, Arrays,
Functions, Writing Safe Code,
Control Structures, File Input / Output, Introduction to Text Processing, Text Processing
Functions, Loop Control, Hashes, DBM Databases,
Advanced Sorting, Regular Expressions, Environment
Application to Bioinformatics-
Data Structures and Algorithms for biological sequences
Generating random DNA, Transcribing DNA to RNA,
Simulating DNA mutations Reading DNA from files,
GeneBank Separating Sequences and Annotation, Parsing
PDB: Overview, Files and Folders, Parsing PDB Files.
BLAST: String Matching and Homology, Blast output
files, Parsing BLAST output, Presenting data.
If you are interested please